Sequence assembly with CAFTOOLS.
نویسندگان
چکیده
Large-scale genomic sequencing requires a software infrastructure to support and integrate applications that are not directly compatible. We describe a suite of software tools built around the Common Assembly Format (CAF), a comprehensive representation of a sequence assembly as a text file. These tools form the backbone of sequencing informatics at the Sanger Centre and the Genome Sequencing Center. The CAF format is intentionally flexible, and our Perl and C libraries, which parse and manipulate it, provide powerful tools for creating new applications as well as wrappers to incorporate other software. The tools are available free by anonymous FTP from ftp://ftp.sanger.ac.uk/pub/badger/.
منابع مشابه
A bi-objective model for the assembly flow shop scheduling problem with sequence dependent setup times and considering energy consumption
متن کامل
A three-stage assembly flow shop scheduling problem with blocking and sequence-dependent set up times
This paper considers a three-stage assembly flowshop scheduling problem with sequence-dependent setup < /div> times at the first stage and blocking times between each stage in such a way that the weighted mean completion time and makespan are minimized. Obtaining an optimal solution for this type of complex, large-sized problem in reasonable computational time using traditiona...
متن کاملA two-stage stochastic rule-based model to determine pre-assembly buffer content
This study considers instant decision-making needs of the automobile manufactures for resequencing vehicles before final assembly (FA). We propose a rule-based two-stage stochastic model to determine the number of spare vehicles that should be kept in the pre-assembly buffer to restore the altered sequence due to paint defects and upstream department constraints. First stage of the model decide...
متن کاملA Hybrid Unconscious Search Algorithm for Mixed-model Assembly Line Balancing Problem with SDST, Parallel Workstation and Learning Effect
Due to the variety of products, simultaneous production of different models has an important role in production systems. Moreover, considering the realistic constraints in designing production lines attracted a lot of attentions in recent researches. Since the assembly line balancing problem is NP-hard, efficient methods are needed to solve this kind of problems. In this study, a new hybrid met...
متن کاملA Multi-objective Mixed Model Two-sided Assembly Line Sequencing Problem in a Make –To- Order Environment with Customer Order Prioritization
Mixed model two-sided assembly lines (MM2SAL) are applied to assemble large product models, which is produced in high-volume. So, the sequence planning of products to reduce cost and increase productivity in this kind of lines is imperative. The presented problem is tackled in two steps. In step 1, a framework is developed to select and prioritize customer orders under the finite capacity of th...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Genome research
دوره 8 3 شماره
صفحات -
تاریخ انتشار 1998